1XI5	Endocytosis Exocytosis	date	Sep 21, 2004
title	Clathrin D6 Coat With Auxilin J-Domain
authors	A.Fotin, Y.Cheng, N.Grigorieff, T.Walz, S.C.Harrison, T.Kirchhaus
compound		source
Molecule: Clathrin Heavy Chain Chain: A, B, C, D, E, F, G, H, I Fragment: Residues 1-1630		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Tissue: Brain
Molecule: Auxilin J-Domain Chain: J, K, L, M, N, O, P, Q, R Fragment: Residues 797-910		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Tissue: Brain
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	12.00 Å
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, I, G
Primary reference	Structure of an auxilin-bound clathrin coat and its implications for the mechanism of uncoating., Fotin A, Cheng Y, Grigorieff N, Walz T, Harrison SC, Kirchhausen T, Nature 2004 Oct 24;. PMID:15502813

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk] Biological Unit Coordinates (1xi5.pdb1.gz) 3316 Kb CSU: Contacts of Structural Units for 1XI5 Retrieve 1XI5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XI5 from S2C, [Save to disk]

View 1XI5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XI5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XI5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1xi5a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1xi5b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1xi5c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1xi5d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1xi5e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1xi5f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1xi5g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1xi5h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1xi5i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1xi5j_, region J [Jmol] [rasmolscript] [script source]     - Domain d1xi5k_, region K [Jmol] [rasmolscript] [script source]     - Domain d1xi5l_, region L [Jmol] [rasmolscript] [script source]     - Domain d1xi5m_, region M [Jmol] [rasmolscript] [script source]     - Domain d1xi5n_, region N [Jmol] [rasmolscript] [script source]     - Domain d1xi5o_, region O [Jmol] [rasmolscript] [script source]     - Domain d1xi5p_, region P [Jmol] [rasmolscript] [script source]     - Domain d1xi5q_, region Q [Jmol] [rasmolscript] [script source]     - Domain d1xi5r_, region R [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xi5_L] [1xi5_M] [1xi5_N] [1xi5_F] [1xi5_G] [1xi5_C] [1xi5] [1xi5_P] [1xi5_R] [1xi5_J] [1xi5_D] [1xi5_Q] [1xi5_O] [1xi5_K] [1xi5_H] [1xi5_E] [1xi5_I] [1xi5_B] [1xi5_A] SWISS-PROT database: [Q27974] [P49951] Domain organization of [AUXI_BOVIN] [CLH1_BOVIN] by SWISSPFAM Domains found in 1XI5: [CLH] [DnaJ ] by SMART

Other resources with information on 1XI5

Community annotation for 1XI5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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