1XKE Protein Transport date Sep 28, 2004
title Solution Structure Of The Second Ran-Binding Domain From Hum
authors J.P.Geyer, R.Doeker, W.Kremer, X.Zhao, J.Kuhlmann, H.R.Kalbitzer
compound source
Molecule: Ran-Binding Protein 2
Chain: A
Fragment: Ran-Binding Domain 2 (Ranbd2)
Synonym: Ranbp2, Nuclear Pore Complex Protein Nup358, Nucle Nup358, 358 Kda Nucleoporin, P270;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the Ran-binding domain 2 of RanBP2 and its interaction with the C terminus of Ran., Geyer JP, Doker R, Kremer W, Zhao X, Kuhlmann J, Kalbitzer HR, J Mol Biol. 2005 May 6;348(3):711-25. PMID:15826666
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (716 Kb) [Save to disk]
  • Biological Unit Coordinates (1xke.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1XKE
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1XKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XKE from S2C, [Save to disk]
  • View 1XKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XKE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XKE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xke] [1xke_A]
  • SWISS-PROT database: [P49792]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [RBP2_HUMAN] by SWISSPFAM
  • Domain found in 1XKE: [RanBD ] by SMART
  • Other resources with information on 1XKE
  • Community annotation for 1XKE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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