OCA Atlas for 1XO3

1XO3

Structural Genomics, Unknown Function

date

Oct 05, 2004

title

Solution Structure Of Ubiquitin Like Protein From Mus Muscul

authors

S.Singh, M.Tonelli, R.C.Tyler, A.Bahrami, M.S.Lee, J.L.Markley, Ce Eukaryotic Structural Genomics (Cesg)

compound

source

Molecule: Riken Cdna 2900073h19
Chain: A
Synonym: Ubiquitin-Like Protein
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

method

Solution NMR

related structures

by homologous chain: 1WGK

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1., Singh S, Tonelli M, Tyler RC, Bahrami A, Lee MS, Markley JL, Protein Sci. 2005 Aug;14(8):2095-102. PMID:16046629

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (593 Kb) [Save to disk]

Biological Unit Coordinates (1xo3.pdb1.gz) 29 Kb

CSU: Contacts of Structural Units for 1XO3

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1XO3 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1XO3 from S2C, [Save to disk]

View 1XO3 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XO3

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1XO3, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1xo3a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xo3] [1xo3_A]

SWISS-PROT database: [Q9D2P4]

Domain organization of [URM1_MOUSE] by SWISSPFAM

Other resources with information on 1XO3

Community annotation for 1XO3 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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