1XTJ Gene Regulation date Oct 22, 2004
title Structure Of Human Uap56 In Complex With Adp
authors H.Shi, O.Cordin, C.M.Minder, P.Linder, R.M.Xu
compound source
Molecule: Probable Atp-Dependent Rna Helicase P47
Chain: A
Synonym: Hla-B Associated Transcript-1, Uap56
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bat1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.988 78.201 63.192 90.00 103.42 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ACY, ADP, MG enzyme
related structures by homologous chain: 1XTK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the human ATP-dependent splicing and export factor UAP56., Shi H, Cordin O, Minder CM, Linder P, Xu RM, Proc Natl Acad Sci U S A 2004 Dec 21;101(51):17628-33. Epub 2004 Dec 07. PMID:15585580
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1xtj.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 1XTJ
  • CSU: Contacts of Structural Units for 1XTJ
  • Likely Quarternary Molecular Structure file(s) for 1XTJ
  • Structure Factors (127 Kb)
  • Retrieve 1XTJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XTJ from S2C, [Save to disk]
  • View 1XTJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XTJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XTJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xtja2, region A:255-423 [Jmol] [rasmolscript] [script source]
        - Domain d1xtja1, region A:46-254 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xtj_A] [1xtj]
  • SWISS-PROT database: [Q13838]
  • Belongs to the nuclear mrna exporter (mrna-e) family according to TCDB.
  • Domain organization of [UAP56_HUMAN] by SWISSPFAM
  • Domains found in 1XTJ: [DEXDc] [HELICc ] by SMART
  • Other resources with information on 1XTJ
  • Community annotation for 1XTJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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