1XUH Serine Protease date Oct 10, 1997
title Trypsin-Keto-Babim-Co+2, Ph 8.2
authors B.A.Katz, J.M.Clark, J.S.Finer-Moore, T.E.Jenkins, C.R.Johnson, M C.Luong, W.R.Moore, R.M.Stroud
compound source
Molecule: Trypsin
Chain: A
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 31 2 1
R_factor 0.135 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.990 54.990 109.630 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand BAO, CA, CO, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1J14, 1TAB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of potent selective zinc-mediated serine protease inhibitors., Katz BA, Clark JM, Finer-Moore JS, Jenkins TE, Johnson CR, Ross MJ, Luong C, Moore WR, Stroud RM, Nature 1998 Feb 5;391(6667):608-12. PMID:9468142
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1xuh.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1XUH
  • CSU: Contacts of Structural Units for 1XUH
  • Likely Quarternary Molecular Structure file(s) for 1XUH
  • Structure Factors (111 Kb)
  • Retrieve 1XUH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XUH from S2C, [Save to disk]
  • Re-refined 1xuh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XUH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XUH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XUH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xuh__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1xuh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xuh] [1xuh_A]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1XUH: [Tryp_SPc ] by SMART
  • Other resources with information on 1XUH
  • Community annotation for 1XUH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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