1XV6 Rna date Oct 27, 2004
title The Solution Structure Of 2',5'-Linked 3'-O-(2- Methoxyethyl)-Rna Hairpin
authors M.Plevnik, Z.Gdaniec, J.Plavec
compound source
Molecule: 5'-R((C2l)P(G2l)P(C2l)P(G2l)P(A2l)P(A2l) P(U2l)P(U2l)P(C2l)P(G2l)P(C2l)P(G2l))-2';
Chain: A
Synonym: 2'-Moe Rna
Engineered: Yes
Synthetic: Yes
Other_details: Solid Phase Synthesis, Phosphoramidite Chemistry
methodSolution NMR
ligand A2L, C2L, G2L, U2L enzyme
Primary referenceSolution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex., Plevnik M, Gdaniec Z, Plavec J, Nucleic Acids Res 2005 Mar 23;33(6):1749-59. Print 2005. PMID:15788747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1XV6
  • CSU: Contacts of Structural Units for 1XV6
  • Original NMR restraints for 1XV6 from PDB
  • Retrieve 1XV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XV6 from S2C, [Save to disk]
  • View 1XV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XV6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XV6, from MSDmotif at EBI
  • Fold representative 1xv6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xv6] [1xv6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1XV6
  • Community annotation for 1XV6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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