1XYH	Isomerase	date	Nov 10, 2004
title	Crystal Structure Of Recombinant Human Cyclophilin J
authors	L.L.Huang, X.M.Zhao, C.Q.Huang, L.Yu, Z.X.Xia
compound		source
Molecule: Cyclophilin-Like Protein Ppil3b Chain: A Synonym: Cyclophilin J Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Fetal Brain Gene: Ppil3b Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptxb1
symmetry	Space Group: P 31 2 1	R_factor 0.175 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.309 41.309 172.116 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand		enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A catalytic step 2 spliceosome...
Primary reference	Structure of recombinant human cyclophilin J, a novel member of the cyclophilin family., Huang LL, Zhao XM, Huang CQ, Yu L, Xia ZX, Acta Crystallogr D Biol Crystallogr 2005 Mar;61(Pt 3):316-21. Epub 2005, Feb 24. PMID:15735342

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk] Biological Unit Coordinates (1xyh.pdb1.gz) 26 Kb CSU: Contacts of Structural Units for 1XYH Likely Quarternary Molecular Structure file(s) for 1XYH Structure Factors (78 Kb) Retrieve 1XYH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XYH from S2C, [Save to disk] Re-refined 1xyh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1XYH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XYH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XYH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xyh_A] [1xyh] SWISS-PROT database: [Q9H2H8] Domain organization of [PPIL3_HUMAN] by SWISSPFAM

Other resources with information on 1XYH

Community annotation for 1XYH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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