1Y69	Ribosome	date	Dec 04, 2004
title	Rrf Domain I In Complex With The 50s Ribosomal Subunit From Deinococcus Radiodurans
authors	D.N.Wilson, F.Schluenzen, J.M.Harms, T.Yoshida, T.Ohkubo, R.Albre J.Buerger, Y.Kobayashi, P.Fucini
compound		source
Molecule: 23s Ribosomal Rna Chain		Organism_scientific: Deinococcus Radiodurans R1 Organism_taxid: 243230
Molecule: 5s Ribosomal Rna Chain: 9		Organism_scientific: Deinococcus Radiodurans R1 Organism_taxid: 243230
Molecule: 50s Ribosomal Protein L16 Chain: K		Organism_scientific: Deinococcus Radiodurans (Strain Atcc 1 Dsm 20539 Jcm 16871 Lmg 4051 Nbrc 15346 Ncimb 9279 Vkm B-1422); Organism_taxid: 243230 Strain: Atcc 13939 Dsm 20539 Jcm 16871 Lmg 4051 Nbr Ncimb 9279 R1 Vkm B-1422;
Molecule: 50s Ribosomal Protein L27 Chain: U		Organism_scientific: Deinococcus Radiodurans (Strain Atcc 1 Dsm 20539 Jcm 16871 Lmg 4051 Nbrc 15346 Ncimb 9279 Vkm B-1422); Organism_taxid: 243230 Strain: Atcc 13939 Dsm 20539 Jcm 16871 Lmg 4051 Nbr Ncimb 9279 R1 Vkm B-1422;
Molecule: Ribosome-Recycling Factor Chain: 8 Fragment: Unp Residues 1-30 And 106-185 Synonym: Rrf,Ribosome-Releasing Factor Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K12 Gene: Frr, Rrf, B0172, Jw0167 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 2 2 2	R_factor 0.275 R_Free 0.338
crystal cell	length a length b length c angle alpha angle beta angle gamma 168.700 405.000 693.000 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.33 Å
Gene Ontology	Chain Function Process Component 8 K U
Primary reference	X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit., Wilson DN, Schluenzen F, Harms JM, Yoshida T, Ohkubo T, Albrecht R, Buerger J, Kobayashi Y, Fucini P, EMBO J 2005 Jan 26;24(2):251-60. Epub 2004 Dec 23. PMID:15616575

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1093 Kb) [Save to disk] Biological Unit Coordinates (1y69.pdb1.gz) 1086 Kb CSU: Contacts of Structural Units for 1Y69 Likely Quarternary Molecular Structure file(s) for 1Y69 Structure Factors (1967 Kb) Retrieve 1Y69 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y69 from S2C, [Save to disk]

View 1Y69 in 3D

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Visual 3D analysis of 1Y69

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y69, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y69_0] [1y69_9] [1y69_K] [1y69] [1y69_8] [1y69_U] SWISS-PROT database: [Q9RXJ5] [Q9RY65] [P0A807] Domain organization of [RL16_DEIRA] [RL27_DEIRA] [RRF_ECO57] by SWISSPFAM

Other resources with information on 1Y69

Community annotation for 1Y69 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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