OCA Atlas for 1YA7

1YA7

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, B, G, D, F, E, A
H, M, N, I, L, J, K
T, U, Q, R, P, O, S

Primary reference

The 1.9 A structure of a proteasome-11S activator complex and implications for proteasome-PAN/PA700 interactions., Forster A, Masters EI, Whitby FG, Robinson H, Hill CP, Mol Cell 2005 May 27;18(5):589-99. PMID:15916965

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (738 Kb) [Save to disk]

Biological Unit Coordinates (1ya7.pdb1.gz) 1453 Kb

LPC: Ligand-Protein Contacts for 1YA7

CSU: Contacts of Structural Units for 1YA7

Likely Quarternary Molecular Structure file(s) for 1YA7

Structure Factors (3940 Kb)

Retrieve 1YA7 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YA7 from S2C, [Save to disk]

Re-refined 1ya7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YA7 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ya7] [1ya7_A] [1ya7_B] [1ya7_C] [1ya7_D] [1ya7_E] [1ya7_F] [1ya7_G] [1ya7_H] [1ya7_I] [1ya7_J] [1ya7_K] [1ya7_L] [1ya7_M] [1ya7_N] [1ya7_O] [1ya7_P] [1ya7_Q] [1ya7_R] [1ya7_S] [1ya7_T] [1ya7_U]

SWISS-PROT database: [P25156] [P28061] [Q9U8G2]

Domain found in 1YA7: [Proteasome_A_N ] by SMART

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