1YBZ	Isomerase	date	Dec 21, 2004
title	Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu- 001
authors	D.Lee, L.Chen, D.Nguyen, B.D.Dillard, W.Tempel, J.Habel, W.Zhou, S. L.L.C.Kelley, Z.J.Liu, D.Lin, H.Zhang, J.Praissman, S.Bridger, R.C.Hopkins, F.E.Jenney Jr., H.S.Lee, T.Li, F.L.Poole Ii, C.Sha F.J.Sugar, M.W.W.Adams, J.P.Rose, B.C.Wang, Southeast Collabor Structural Genomics (Secsg)
compound		source
Molecule: Chorismate Mutase Chain: A Ec: 5.4.99.5 Engineered: Yes		Organism_scientific: Pyrococcus Furiosus Organism_taxid: 2261 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.201 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.501 52.501 80.217 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.82 Å
ligand	UNX	enzyme	Isomerase E.C.5.4.99.5 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk] Biological Unit Coordinates (1ybz.pdb1.gz) 14 Kb Biological Unit Coordinates (1ybz.pdb2.gz) 27 Kb LPC: Ligand-Protein Contacts for 1YBZ CSU: Contacts of Structural Units for 1YBZ Likely Quarternary Molecular Structure file(s) for 1YBZ Structure Factors (72 Kb) Retrieve 1YBZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YBZ from S2C, [Save to disk] Re-refined 1ybz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YBZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YBZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YBZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ybz_A] [1ybz] SWISS-PROT database: [Q8U098] Domain organization of [Q8U098_PYRFU] by SWISSPFAM Domain found in 1YBZ: [CM_2 ] by SMART

Other resources with information on 1YBZ

Community annotation for 1YBZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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