1YD0 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, MN enzyme
related structures by homologous chain: 1YD2
Primary referenceStructural insights into the first incision reaction during nucleotide excision repair., Truglio JJ, Rhau B, Croteau DL, Wang L, Skorvaga M, Karakas E, Dellavecchia MJ, Wang H, Van Houten B, Kisker C, EMBO J 2005 Feb 3;. PMID:15692561
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1yd0.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1YD0
  • CSU: Contacts of Structural Units for 1YD0
  • Likely Quarternary Molecular Structure file(s) for 1YD0
  • Structure Factors (175 Kb)
  • Retrieve 1YD0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YD0 from S2C, [Save to disk]
  • Re-refined 1yd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YD0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yd0] [1yd0_A]
  • SWISS-PROT database: [Q9WYA3]
  • Domain found in 1YD0: [GIYc ] by SMART

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