1YDC Hydro-Lyase date Dec 22, 1994
title Structural Basis Of Inhibitor Affinity To Variants Of Human Anhydrase II
authors S.K.Nair, D.W.Christianson
compound source
Molecule: Carbonic Anhydrase II
Chain: A
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.700 41.700 73.000 90.00 104.60 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand HG, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
related structures by homologous chain: 1IF8, 1TTM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of inhibitor affinity to variants of human carbonic anhydrase II., Nair SK, Krebs JF, Christianson DW, Fierke CA, Biochemistry 1995 Mar 28;34(12):3981-9. PMID:7696263
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1ydc.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1YDC
  • CSU: Contacts of Structural Units for 1YDC
  • Likely Quarternary Molecular Structure file(s) for 1YDC
  • Retrieve 1YDC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YDC from S2C, [Save to disk]
  • View 1YDC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YDC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YDC, from MSDmotif at EBI
  • Genome occurence of 1YDC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ydc__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ydc] [1ydc_A]
  • SWISS-PROT database: [P00918]
  • Domain organization of [CAH2_HUMAN] by SWISSPFAM
  • Domain found in 1YDC: [Carb_anhydrase ] by SMART
  • Other resources with information on 1YDC
  • Community annotation for 1YDC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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