1YDE	Oxidoreductase	date	Dec 23, 2004
title	Crystal Structure Of Human Retinal Short-Chain Dehydrogenase
authors	P.Lukacik, G.Bunkozci, K.Kavanagh, M.Sundstrom, C.Arrowsmith, A.E F.Von Delft, U.Oppermann, Structural Genomics Consortium (Sgc
compound		source
Molecule: Retinal Dehydrogenasereductase 3 Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: P11 Expression_system_plasmid: Retsdr3a-P11
symmetry	Space Group: P 1 21 1	R_factor 0.181 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 167.115 98.823 167.463 90.00 115.87 90.00
method	X-Ray Diffraction	resolution	2.40 Å
Gene Ontology	Chain Function Process Component F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G
Primary reference	Structural and biochemical characterization of human orphan DHRS10 reveals a novel cytosolic enzyme with steroid dehydrogenase activity., Lukacik P, Keller B, Bunkoczi G, Kavanagh KL, Lee WH, Adamski J, Oppermann U, Biochem J. 2007 Mar 15;402(3):419-27. PMID:17067289

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (598 Kb) [Save to disk] Biological Unit Coordinates (1yde.pdb1.gz) 154 Kb Biological Unit Coordinates (1yde.pdb2.gz) 155 Kb Biological Unit Coordinates (1yde.pdb3.gz) 153 Kb Biological Unit Coordinates (1yde.pdb4.gz) 146 Kb CSU: Contacts of Structural Units for 1YDE Likely Quarternary Molecular Structure file(s) for 1YDE Structure Factors (1498 Kb) Retrieve 1YDE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YDE from S2C, [Save to disk] Re-refined 1yde structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YDE in 3D

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Visual 3D analysis of 1YDE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YDE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yde_A] [1yde_G] [1yde_H] [1yde_M] [1yde_I] [1yde_K] [1yde_D] [1yde_L] [1yde_B] [1yde_J] [1yde_F] [1yde_O] [1yde_P] [1yde] [1yde_C] [1yde_E] [1yde_N] SWISS-PROT database: [Q9BPX1] Domain organization of [DHB14_HUMAN] by SWISSPFAM

Other resources with information on 1YDE

Community annotation for 1YDE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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