OCA Atlas for 1YDE

1YDE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
F, K, E, B, O, A, C, L, I, G, N, P, M, J, D, H

Primary reference

Structural and biochemical characterization of human orphan DHRS10 reveals a novel cytosolic enzyme with steroid dehydrogenase activity., Lukacik P, Keller B, Bunkoczi G, Kavanagh KL, Lee WH, Adamski J, Oppermann U, Biochem J. 2007 Mar 15;402(3):419-27. PMID:17067289

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (583 Kb) [Save to disk]

Biological Unit Coordinates (1yde.pdb1.gz) 151 Kb

Biological Unit Coordinates (1yde.pdb2.gz) 152 Kb

Biological Unit Coordinates (1yde.pdb3.gz) 150 Kb

Biological Unit Coordinates (1yde.pdb4.gz) 142 Kb

CSU: Contacts of Structural Units for 1YDE

Likely Quarternary Molecular Structure file(s) for 1YDE

Structure Factors (1498 Kb)

Retrieve 1YDE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YDE from S2C, [Save to disk]

Re-refined 1yde structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YDE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yde] [1yde_A] [1yde_B] [1yde_C] [1yde_D] [1yde_E] [1yde_F] [1yde_G] [1yde_H] [1yde_I] [1yde_J] [1yde_K] [1yde_L] [1yde_M] [1yde_N] [1yde_O] [1yde_P]

SWISS-PROT database: [Q9BPX1]

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