OCA Atlas for 1YG8

1YG8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
O, M, X, J, U, H, Y, G, W, D, Z, I, S, Q, L, b, B, T, V, a, F, K, C, P, E, N, R, A

Primary reference

The asymmetry in the mature amino-terminus of ClpP facilitates a local symmetry match in ClpAP and ClpXP complexes., Bewley MC, Graziano V, Griffin K, Flanagan JM, J Struct Biol. 2006 Feb;153(2):113-28. Epub 2005 Dec 1. PMID:16406682

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (773 Kb) [Save to disk]

Biological Unit Coordinates (1yg8.pdb1.gz) 767 Kb

Biological Unit Coordinates (1yg8.pdb2.gz) 388 Kb

Biological Unit Coordinates (1yg8.pdb3.gz) 388 Kb

CSU: Contacts of Structural Units for 1YG8

Likely Quarternary Molecular Structure file(s) for 1YG8

Retrieve 1YG8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YG8 from S2C, [Save to disk]

View 1YG8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yg8] [1yg8_A] [1yg8_B] [1yg8_C] [1yg8_D] [1yg8_E] [1yg8_F] [1yg8_G] [1yg8_H] [1yg8_I] [1yg8_J] [1yg8_K] [1yg8_L] [1yg8_M] [1yg8_N] [1yg8_O] [1yg8_P] [1yg8_Q] [1yg8_R] [1yg8_S] [1yg8_T] [1yg8_U] [1yg8_V] [1yg8_W] [1yg8_X] [1yg8_Y] [1yg8_Z] [1yg8_a] [1yg8_b]

SWISS-PROT database: [P0A6G7]

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