1YGU	Hydrolase	date	Jan 05, 2005
title	Crystal Structure Of The Tandem Phosphatase Domains Of Rptp A Ptyr Peptide
authors	H.Nam, F.Poy, H.Saito, C.A.Frederick
compound		source
Molecule: Leukocyte Common Antigen Chain: A, B Fragment: D1 And D2 Ptp Domains Synonym: L-Ca, Cd45 Antigen, T200 Ec: 3.1.3.48 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptprc, Cd45 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: T7 Promoter Expression_system_plasmid: Pet
Molecule: Polyoma Middle T Antigen Chain: C, D Fragment: Middle T Antigen (Residues 248-251, Sws:P03077) Engineered: Yes		Synthetic: Yes Other_details: Polyoma Middle T Antigen Ptyr Peptide
symmetry	Space Group: P 1 21 1	R_factor 0.262 R_Free 0.305
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.900 57.920 159.290 90.00 98.66 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	MSE, PTR	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
related structures	by homologous chain: 1YGR
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for the function and regulation of the receptor protein tyrosine phosphatase CD45., Nam HJ, Poy F, Saito H, Frederick CA, J Exp Med 2005 Feb 7;201(3):441-52. Epub 2005 Jan 31. PMID:15684325

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk] Biological Unit Coordinates (1ygu.pdb1.gz) 96 Kb Biological Unit Coordinates (1ygu.pdb2.gz) 97 Kb LPC: Ligand-Protein Contacts for 1YGU CSU: Contacts of Structural Units for 1YGU Likely Quarternary Molecular Structure file(s) for 1YGU Retrieve 1YGU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YGU from S2C, [Save to disk]

View 1YGU in 3D

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Visual 3D analysis of 1YGU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YGU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ygu] [1ygu_B] [1ygu_A] [1ygu_C] [1ygu_D] SWISS-PROT database: [P03077] [P08575] Domain organization of [MT_POVMA] [PTPRC_HUMAN] by SWISSPFAM Domain found in 1YGU: [PTPc ] by SMART

Other resources with information on 1YGU

Community annotation for 1YGU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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