1YH2 Ligase date Jan 06, 2005
title Ubiquitin-Conjugating Enzyme Hspc150
authors J.R.Walker, G.V.Avvakumov, E.M.Newman, F.Mackenzie, I.Kozieradzk M.Sundstrom, C.Arrowsmith, A.Edwards, A.Bochkarev, S.Dhe-Pagano Structural Genomics Consortium (Sgc)
compound source
Molecule: Hspc150 Protein Similar To Ubiquitin-Conjugating
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hspc150
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 43 21 2
R_factor 0.202 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.831 54.831 183.279 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceA human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen., Sheng Y, Hong JH, Doherty R, Srikumar T, Shloush J, Avvakumov GV, Walker JR, Xue S, Neculai D, Wan JW, Kim SK, Arrowsmith CH, Raught B, Dhe-Paganon S, Mol Cell Proteomics. 2012 Aug;11(8):329-41. Epub 2012 Apr 10. PMID:22496338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1yh2.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1YH2
  • Likely Quarternary Molecular Structure file(s) for 1YH2
  • Structure Factors (283 Kb)
  • Retrieve 1YH2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YH2 from S2C, [Save to disk]
  • Re-refined 1yh2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YH2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YH2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YH2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yh2] [1yh2_A]
  • SWISS-PROT database: [Q9NPD8]
  • Domain organization of [UBE2T_HUMAN] by SWISSPFAM
  • Domain found in 1YH2: [UBCc ] by SMART
  • Other resources with information on 1YH2
  • Community annotation for 1YH2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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