OCA Atlas for 1YHU

1YHU

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

HEM, OXY, ZN

enzyme

note

1YHU (Molecule of the Month:pdb159)

Gene
Ontology

Chain	Function	Process	Component
F, J, R, B, N, V
L, U, D, E, P, G, K, W, C, O, H, T, I, Q, X, S, A, M

Primary reference

Sulfide binding is mediated by zinc ions discovered in the crystal structure of a hydrothermal vent tubeworm hemoglobin., Flores JF, Fisher CR, Carney SL, Green BN, Freytag JK, Schaeffer SW, Royer WE Jr, Proc Natl Acad Sci U S A 2005 Feb 22;102(8):2713-8. Epub 2005 Feb 14. PMID:15710902

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (535 Kb) [Save to disk]

Biological Unit Coordinates (1yhu.pdb1.gz) 516 Kb

LPC: Ligand-Protein Contacts for 1YHU

CSU: Contacts of Structural Units for 1YHU

Likely Quarternary Molecular Structure file(s) for 1YHU

Structure Factors (1485 Kb)

Retrieve 1YHU in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YHU from S2C, [Save to disk]

Re-refined 1yhu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YHU in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yhu] [1yhu_A] [1yhu_B] [1yhu_C] [1yhu_D] [1yhu_E] [1yhu_F] [1yhu_G] [1yhu_H] [1yhu_I] [1yhu_J] [1yhu_K] [1yhu_L] [1yhu_M] [1yhu_N] [1yhu_O] [1yhu_P] [1yhu_Q] [1yhu_R] [1yhu_S] [1yhu_T] [1yhu_U] [1yhu_V] [1yhu_W] [1yhu_X]

SWISS-PROT database: [P80592] [Q8IFJ9] [Q8IFK2] [Q8IFK4]

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