1YK8		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	T2M	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Acyclic cyanamide-based inhibitors of cathepsin K., Barrett DG, Deaton DN, Hassell AM, McFadyen RB, Miller AB, Miller LR, Payne JA, Shewchuk LM, Willard DH Jr, Wright LL, Bioorg Med Chem Lett 2005 Jun 15;15(12):3039-43. PMID:15896958

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk] Biological Unit Coordinates (1yk8.pdb1.gz) 34 Kb LPC: Ligand-Protein Contacts for 1YK8 CSU: Contacts of Structural Units for 1YK8 Likely Quarternary Molecular Structure file(s) for 1YK8 Structure Factors (50 Kb) Retrieve 1YK8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YK8 from S2C, [Save to disk] Re-refined 1yk8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YK8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yk8] [1yk8_A] SWISS-PROT database: [P43235] Domain found in 1YK8: [Pept_C1 ] by SMART

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