1YKA Electron Transport date Jan 17, 2005
title Solution Structure Of Grx4, A Monothiol Glutaredoxin From E.
authors M.Fladvad, M.Bellanda, A.P.Fernandes, C.Andresen, S.Mammi, A.Holm A.Vlamis-Gardikas, M.Sunnerhagen
compound source
Molecule: Monothiol Glutaredoxin Ydhd
Chain: A
Synonym: Monothiol Glutaredoxin
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Ydhd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Grxa-Grxb-Grxc-
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity
  • protein disulfide oxidoreduc...
  • disulfide oxidoreductase act...


    • Primary referenceMolecular mapping of functionalities in the solution structure of reduced Grx4, a monothiol glutaredoxin from Escherichia coli., Fladvad M, Bellanda M, Fernandes AP, Mammi S, Vlamis-Gardikas A, Holmgren A, Sunnerhagen M, J Biol Chem 2005 Jul 1;280(26):24553-61. Epub 2005 Apr 18. PMID:15840565
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (602 Kb) [Save to disk]
  • Biological Unit Coordinates (1yka.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 1YKA
  • Original NMR restraints for 1YKA from PDB
  • Retrieve 1YKA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YKA from S2C, [Save to disk]
    • View 1YKA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YKA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YKA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yka] [1yka_A]
  • SWISS-PROT database: [P0AC69]
  • Domain organization of [GLRX4_ECOLI] by SWISSPFAM
    • Other resources with information on 1YKA
  • Community annotation for 1YKA at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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