1YLR	Oxidoreductase	date	Jan 19, 2005
title	The Structure Of E.Coli Nitroreductase With Bound Acetate, C Form 1
authors	P.R.Race, A.L.Lovering, R.M.Green, A.Ossor, S.A.White, P.F.Searle C.J.Wrighton, E.I.Hyde
compound		source
Molecule: Oxygen-Insensitive Nad(P)H Nitroreductase Chain: A, B Synonym: Fmn-Dependent Nitroreductase, Dihydropteridine Red Ec: 1.5.1.34 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Nfnb, Dpra, Nfsb, Nfsi, Ntr Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11c
symmetry	Space Group: P 41 21 2	R_factor 0.170 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.580 57.580 263.180 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	ACT, FMN	enzyme	Oxidoreductase E.C.1.5.1.34 BRENDA
related structures	by homologous chain: 1ICR, 1YKI
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and mechanistic studies of Escherichia coli nitroreductase with the antibiotic nitrofurazone. Reversed binding orientations in different redox states of the enzyme., Race PR, Lovering AL, Green RM, Ossor A, White SA, Searle PF, Wrighton CJ, Hyde EI, J Biol Chem. 2005 Apr 8;280(14):13256-64. Epub 2005 Jan 31. PMID:15684426

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (1ylr.pdb1.gz) 79 Kb LPC: Ligand-Protein Contacts for 1YLR CSU: Contacts of Structural Units for 1YLR Likely Quarternary Molecular Structure file(s) for 1YLR Structure Factors (367 Kb) Retrieve 1YLR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YLR from S2C, [Save to disk] Re-refined 1ylr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YLR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YLR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YLR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ylr_B] [1ylr] [1ylr_A] SWISS-PROT database: [P38489] Domain organization of [NFNB_ECOLI] by SWISSPFAM

Other resources with information on 1YLR

Community annotation for 1YLR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---