1YNK date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand SC5 enzyme
Primary referenceCocrystal structures of NC6.8 Fab identify key interactions for high potency sweetener recognition: implications for the design of synthetic sweeteners., Gokulan K, Khare S, Ronning DR, Linthicum SD, Sacchettini JC, Rupp B, Biochemistry 2005 Jul 26;44(29):9889-98. PMID:16026161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1ynk.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 1YNK
  • CSU: Contacts of Structural Units for 1YNK
  • Likely Quarternary Molecular Structure file(s) for 1YNK
  • Structure Factors (411 Kb)
  • Retrieve 1YNK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YNK from S2C, [Save to disk]
  • Re-refined 1ynk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YNK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ynk] [1ynk_H] [1ynk_L]
  • SWISS-PROT database: [P01867] [Q6PJB2]
  • Domains found in 1YNK: [IG_like] [IGv ] by SMART

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