1YOJ	Transferase	date	Jan 27, 2005
title	Crystal Structure Of Src Kinase Domain
authors	C.B.Breitenlechner, N.A.Kairies, K.Honold, S.Scheiblich, H.Koll, E.Greiter, S.Koch, W.Schaefer, R.Huber, R.A.Engh
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src Chain: A, B Fragment: Src Kinase Domain Synonym: P60-Src, C-Src Ec: 2.7.1.112 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1	R_factor 0.214 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.867 62.542 73.902 100.52 88.88 89.99
method	X-Ray Diffraction	resolution	1.95 Å
ligand		enzyme	Transferase E.C.2.7.1.112 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of active SRC kinase domain complexes., Breitenlechner CB, Kairies NA, Honold K, Scheiblich S, Koll H, Greiter E, Koch S, Schafer W, Huber R, Engh RA, J Mol Biol. 2005 Oct 21;353(2):222-31. PMID:16168436

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (1yoj.pdb1.gz) 40 Kb Biological Unit Coordinates (1yoj.pdb2.gz) 38 Kb CSU: Contacts of Structural Units for 1YOJ Likely Quarternary Molecular Structure file(s) for 1YOJ Retrieve 1YOJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YOJ from S2C, [Save to disk]

View 1YOJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YOJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YOJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yoj_B] [1yoj_A] [1yoj] SWISS-PROT database: [P12931] Domain organization of [SRC_HUMAN] by SWISSPFAM Domain found in 1YOJ: [TyrKc ] by SMART

Other resources with information on 1YOJ

Community annotation for 1YOJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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