1YP3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ATP, SO4 enzyme
related structures by homologous chain: 1YP4
Gene
Ontology
ChainFunctionProcessComponent
B, D, A, C


Primary referenceCrystal structure of potato tuber ADP-glucose pyrophosphorylase., Jin X, Ballicora MA, Preiss J, Geiger JH, EMBO J 2005 Feb 23;24(4):694-704. Epub 2005 Feb 3. PMID:15692569
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (1yp3.pdb1.gz) 274 Kb
  • LPC: Ligand-Protein Contacts for 1YP3
  • CSU: Contacts of Structural Units for 1YP3
  • Likely Quarternary Molecular Structure file(s) for 1YP3
  • Structure Factors (437 Kb)
  • Retrieve 1YP3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YP3 from S2C, [Save to disk]
  • Re-refined 1yp3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YP3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yp3] [1yp3_A] [1yp3_B] [1yp3_C] [1yp3_D]
  • SWISS-PROT database: [P23509]

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