1YQA Dna Binding Protein date Feb 01, 2005
title Engineering The Structural Stability And Functional Properti Gi Domain Into The Intrinsically Unfolded Gii Domain Of The Linker Histone Hho1p
authors A.Sanderson, K.Stott, T.J.Stevens, J.O.Thomas
compound source
Molecule: Histone H1
Chain: A
Fragment: Gii Loop Mutant (Gii-L), Residues 171-258
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Hho1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
methodSolution NMR
related structures by homologous chain: 1USS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering the Structural Stability and Functional Properties of the GI Domain into the Intrinsically Unfolded GII Domain of the Yeast Linker Histone Hho1p., Sanderson A, Stott K, Stevens TJ, Thomas JO, J Mol Biol 2005 Jun 10;349(3):608-20. Epub 2005 Apr 19. PMID:15878177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (1yqa.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1YQA
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YQA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YQA from S2C, [Save to disk]
    • View 1YQA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YQA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YQA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yqa] [1yqa_A]
  • SWISS-PROT database: [P53551]
  • Domain organization of [H1_YEAST] by SWISSPFAM
  • Domain found in 1YQA: [H15 ] by SMART
    • Other resources with information on 1YQA
  • Community annotation for 1YQA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science