1YSM Metal Binding Protein date Feb 08, 2005
title Nmr Structure Of N-Terminal Domain (Residues 1-77) Of Siah-I Protein.
authors S.Bhattacharya, Y.T.Lee, W.Michowski, B.Jastrzebska, A.Filipek, J.Kuznicki, W.J.Chazin
compound source
Molecule: Calcyclin-Binding Protein
Chain: A
Fragment: N-Terminal Domain
Synonym: Cacybp, Siah-Interacting Protein, Sip
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Cacybp, Sip
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
methodSolution NMR
Primary referenceThe Modular Structure of SIP Facilitates Its Role in Stabilizing Multiprotein Assemblies(,)., Bhattacharya S, Lee YT, Michowski W, Jastrzebska B, Filipek A, Kuznicki J, Chazin WJ, Biochemistry 2005 Jul 12;44(27):9462-9471. PMID:15996101
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (317 Kb) [Save to disk]
  • Biological Unit Coordinates (1ysm.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1YSM
  • Original NMR restraints for 1YSM from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YSM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YSM from S2C, [Save to disk]
    • View 1YSM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YSM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YSM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ysm] [1ysm_A]
  • SWISS-PROT database: [Q9CXW3]
  • Domain organization of [CYBP_MOUSE] by SWISSPFAM
    • Other resources with information on 1YSM
  • Community annotation for 1YSM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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