1YW1 Structural Genomics, Unknown Function date Feb 16, 2005
title Structure Of Ytnj From Bacillus Subtilis In Complex With Fmn
authors S.K.Burley, New York Sgx Research Center For Structural Genom (Nysgxrc)
compound source
Molecule: Protein Ytnj
Chain: A
Synonym: Nitrilotriacetate Monooxygenase Component A Homolo
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Ytnj
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet28b
symmetry Space Group: P 43 21 2
R_factor 0.182 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.254 86.254 194.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.81 Å
ligand FMN, GLC, MSE enzyme
related structures by homologous chain: 1TVL
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1yw1.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 1YW1
  • CSU: Contacts of Structural Units for 1YW1
  • Likely Quarternary Molecular Structure file(s) for 1YW1
  • Structure Factors (137 Kb)
  • Retrieve 1YW1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YW1 from S2C, [Save to disk]
  • Re-refined 1yw1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YW1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YW1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YW1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yw1] [1yw1_A]
  • SWISS-PROT database: [O34974]
  • Domain organization of [MOXC_BACSU] by SWISSPFAM
    • Other resources with information on 1YW1
  • Community annotation for 1YW1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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