1YW2	Transferase	date	Feb 16, 2005
title	Mutated Mus Musculus P38 Kinase (Mp38)
authors	S.K.Laughlin, M.P.Clark, J.F.Djung, A.Golebiowski, T.A.Brugel, M. R.G.Bookland, M.J.Laufersweiler, J.C.Vanrens, J.A.Townes, B.De, L.C.Hsieh, S.C.Xu, R.L.Walter, M.J.Mekel, M.J.Janusz
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Mitogen-Activated Protein Kinase P38alpha, Map Kin P38alpha, Crk1; Ec: 2.7.1.37 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Mapk14, Crk1, Csbp1, Csbp2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.036 76.954 73.637 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.01 Å
ligand	PGJ BindingDB	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1OVE, 1YQJ
Gene Ontology	Chain Function Process Component A
Primary reference	The development of new isoxazolone based inhibitors of tumor necrosis factor-alpha (TNF-alpha) production., Laughlin SK, Clark MP, Djung JF, Golebiowski A, Brugel TA, Sabat M, Bookland RG, Laufersweiler MJ, Vanrens JC, Townes JA, De B, Hsieh LC, Xu SC, Walter RL, Mekel MJ, Janusz MJ, Bioorg Med Chem Lett 2005 May 2;15(9):2399-403. PMID:15837333

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (1yw2.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 1YW2 CSU: Contacts of Structural Units for 1YW2 Likely Quarternary Molecular Structure file(s) for 1YW2 Structure Factors (258 Kb) Retrieve 1YW2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YW2 from S2C, [Save to disk] Re-refined 1yw2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YW2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YW2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YW2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yw2] [1yw2_A] SWISS-PROT database: [P47811] Domain organization of [MK14_MOUSE] by SWISSPFAM Domain found in 1YW2: [S_TKc ] by SMART

Other resources with information on 1YW2

Community annotation for 1YW2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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