1YX1 Structural Genomics, Unknown Function date Feb 19, 2005
title Crystal Structure Of Protein Of Unknown Function Pa2260 From Pseudomonas Aeruginosa, Possible Sugar Phosphate Isomerase
authors J.Osipiuk, X.Xu, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Ce Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Pa2260
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pa01
Gene: Pa2260
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.636 91.913 124.264 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand IPA, MSE, NA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (1yx1.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 1YX1
  • CSU: Contacts of Structural Units for 1YX1
  • Likely Quarternary Molecular Structure file(s) for 1YX1
  • Structure Factors (603 Kb)
  • Retrieve 1YX1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YX1 from S2C, [Save to disk]
  • Re-refined 1yx1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YX1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YX1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YX1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yx1_A] [1yx1] [1yx1_C] [1yx1_B]
  • SWISS-PROT database: [Q9I1L3]
  • Domain organization of [Q9I1L3_PSEAE] by SWISSPFAM
    • Other resources with information on 1YX1
  • Community annotation for 1YX1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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