1YZ1 Unknown Function date Feb 26, 2005
title Crystal Structure Of Human Translationally Controlled Tumour Associated Protein
authors J.Cavarelli, D.Moras, R.Amson, A.Telerman
compound source
Molecule: Translationally Controlled Tumor Protein
Chain: A, B, C, D
Synonym: Tctp, P23, Histamine-Releasing Factor, Hrf
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.853 93.674 70.349 90.00 114.86 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • calcium ion binding


    • Primary referenceTCTP protects from apoptotic cell death by antagonizing bax function., Susini L, Besse S, Duflaut D, Lespagnol A, Beekman C, Fiucci G, Atkinson AR, Busso D, Poussin P, Marine JC, Martinou JC, Cavarelli J, Moras D, Amson R, Telerman A, Cell Death Differ. 2008 Aug;15(8):1211-20. doi: 10.1038/cdd.2008.18. Epub 2008, Feb 15. PMID:18274553
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (1yz1.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (1yz1.pdb2.gz) 27 Kb
  • Biological Unit Coordinates (1yz1.pdb3.gz) 28 Kb
  • Biological Unit Coordinates (1yz1.pdb4.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1YZ1
  • Likely Quarternary Molecular Structure file(s) for 1YZ1
  • Structure Factors (438 Kb)
  • Retrieve 1YZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YZ1 from S2C, [Save to disk]
  • Re-refined 1yz1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YZ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YZ1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yz1] [1yz1_B] [1yz1_C] [1yz1_D] [1yz1_A]
  • SWISS-PROT database: [P13693]
  • Domain organization of [TCTP_HUMAN] by SWISSPFAM
    • Other resources with information on 1YZ1
  • Community annotation for 1YZ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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