1YZM	Protein Transport	date	Feb 28, 2005
title	Structure Of Rabenosyn (458-503), Rab4 Binding Domain
authors	S.Eathiraj, X.Pan, C.Ritacco, D.G.Lambright
compound		source
Molecule: Fyve-Finger-Containing Rab5 Effector Protein Rabe Chain: A Fragment: Rab4 Binding Domain, Sequence Database Residues 4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Codon Plus-Ril Cells Expression_system_vector_type: Gst Fusion Vector, Pgex Expression_system_plasmid: Pgex6p1
symmetry	Space Group: P 21 21 21	R_factor 0.195 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 26.366 42.236 43.059 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
Primary reference	Structural basis of family-wide Rab GTPase recognition by rabenosyn-5., Eathiraj S, Pan X, Ritacco C, Lambright DG, Nature 2005 Jul 21;436(7049):415-9. PMID:16034420

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk] Biological Unit Coordinates (1yzm.pdb1.gz) 9 Kb CSU: Contacts of Structural Units for 1YZM Likely Quarternary Molecular Structure file(s) for 1YZM Structure Factors (80 Kb) Retrieve 1YZM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YZM from S2C, [Save to disk] Re-refined 1yzm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YZM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YZM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YZM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yzm] [1yzm_A] SWISS-PROT database: [Q9H1K0] Domain organization of [RBNS5_HUMAN] by SWISSPFAM

Other resources with information on 1YZM

Community annotation for 1YZM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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