1Z0S Transferase date Mar 02, 2005
title Crystal Structure Of An Nad Kinase From Archaeoglobus Fulgidus In Complex With Atp
authors J.Liu, Y.Lou, H.Yokota, P.D.Adams, R.Kim, S.H.Kim, Berkeley Structural Genomics Center (Bsgc)
compound source
Molecule: Probable Inorganic Polyphosphateatp-Nad Kinase
Chain: A, B, C, D
Synonym: Polyp, Atp Nad Kinase
Ec: 2.7.1.23
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 2234
Gene: Ppnk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Pb3
Expression_system_plasmid: Pb3.1114b
symmetry Space Group: P 1
R_factor 0.200 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.252 69.731 76.287 106.35 111.32 101.30
method X-Ray Diffractionresolution 1.70 Å
ligand ATP, MG, POP enzyme Transferase E.C.2.7.1.23 BRENDA
related structures by homologous chain: 1Z0U
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures of an NAD kinase from Archaeoglobus fulgidus in complex with ATP, NAD, or NADP., Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH, J Mol Biol. 2005 Nov 25;354(2):289-303. Epub 2005 Sep 30. PMID:16242716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (1z0s.pdb1.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 1Z0S
  • CSU: Contacts of Structural Units for 1Z0S
  • Likely Quarternary Molecular Structure file(s) for 1Z0S
  • Structure Factors (646 Kb)
  • Retrieve 1Z0S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z0S from S2C, [Save to disk]
  • Re-refined 1z0s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z0S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z0S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z0S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z0s_A] [1z0s_D] [1z0s_B] [1z0s] [1z0s_C]
  • SWISS-PROT database: [O30297]
  • Domain organization of [PPNK_ARCFU] by SWISSPFAM
  • Other resources with information on 1Z0S
  • Community annotation for 1Z0S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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