1Z3J Hydrolase date Mar 13, 2005
title Solution Structure Of Mmp12 In The Presence Of N-Isobutyl-N- Methoxyphenylsulfonyl]Glycyl Hydroxamic Acid (Nngh)
authors I.Bertini, V.Calderone, M.Cosenza, M.Fragai, Y.M.Lee, C.Luchinat, S.Mangani, B.Terni, P.Turano
compound source
Molecule: Macrophage Metalloelastase
Chain: A
Fragment: Residues 106-263
Synonym: Hme, Matrix Metalloproteinase-12, Mmp-12, Macropha Elastase, Me;
Ec: 3.4.24.65
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21 (Novagen)
methodSolution NMR
ligand CA, NGH, ZN BindingDB enzyme Hydrolase E.C.3.4.24.65 BRENDA
related structures by homologous chain: 1YCM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational variability of matrix metalloproteinases: Beyond a single 3D structure., Bertini I, Calderone V, Cosenza M, Fragai M, Lee YM, Luchinat C, Mangani S, Terni B, Turano P, Proc Natl Acad Sci U S A 2005 Apr 12;102(15):5334-9. Epub 2005 Apr 4. PMID:15809432
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1z3j.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1Z3J
  • CSU: Contacts of Structural Units for 1Z3J
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Z3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z3J from S2C, [Save to disk]
    • View 1Z3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Z3J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z3J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z3j_A] [1z3j]
  • SWISS-PROT database: [P39900]
  • Domain organization of [MMP12_HUMAN] by SWISSPFAM
  • Domain found in 1Z3J: [ZnMc ] by SMART
    • Other resources with information on 1Z3J
  • Community annotation for 1Z3J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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