1Z3K Structural Genomics, Unknown Function date Mar 14, 2005
title Structural Insight Into The Binding Diversity Between The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
authors X.Ran, J.Song
compound source
Molecule: Cytoplasmic Protein Nck2
Chain: A
Fragment: Sh2 Domain
Synonym: Nck Adaptor Protein 2, Sh2sh3 Adaptor Protein Nck-Beta, Nck-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceStructural insight into the binding diversity between the Tyr-phosphorylated human ephrinBs and Nck2 SH2 domain., Ran X, Song J, J Biol Chem 2005 May 13;280(19):19205-12. Epub 2005 Mar 11. PMID:15764601
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1Z3K
  • Original NMR restraints for 1Z3K from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Z3K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z3K from S2C, [Save to disk]
  • View 1Z3K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z3K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Z3K, from MSDmotif at EBI
  • Fold representative 1z3k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z3k] [1z3k_A]
  • SWISS-PROT database: [O43639]
  • Domain organization of [NCK2_HUMAN] by SWISSPFAM
  • Domain found in 1Z3K: [SH2 ] by SMART
  • Other resources with information on 1Z3K
  • Community annotation for 1Z3K at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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