1Z59 Isomerase date Mar 17, 2005
title Topoisomerase Vi-B, Adp-Bound Monomer Form
authors K.D.Corbett, J.M.Berger
compound source
Molecule: Type II Dna Topoisomerase Vi Subunit B
Chain: A
Synonym: Topovi-B
Ec: 5.99.1.3
Engineered: Yes
Organism_scientific: Sulfolobus Shibatae
Organism_taxid: 2286
Gene: Top6b
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 2
R_factor 0.189 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.573 112.451 56.079 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ADP, MG, MSE enzyme Isomerase E.C.5.99.1.3 BRENDA
related structures by homologous chain: 1MU5, 1Z5C
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural dissection of ATP turnover in the prototypical GHL ATPase TopoVI., Corbett KD, Berger JM, Structure. 2005 Jun;13(6):873-82. PMID:15939019
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1z59.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1Z59
  • CSU: Contacts of Structural Units for 1Z59
  • Likely Quarternary Molecular Structure file(s) for 1Z59
  • Structure Factors (268 Kb)
  • Retrieve 1Z59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z59 from S2C, [Save to disk]
  • Re-refined 1z59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z59
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z59, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z59_A] [1z59]
  • SWISS-PROT database: [O05207]
  • Domain organization of [TOP6B_SULSH] by SWISSPFAM
  • Domain found in 1Z59: [HATPase_c ] by SMART
  • Other resources with information on 1Z59
  • Community annotation for 1Z59 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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