1Z6T	Apoptosis	date	Mar 23, 2005
title	Structure Of The Apoptotic Protease-Activating Factor 1 Boun
authors	S.J.Riedl, W.Li, Y.Chao, R.Schwarzenbacher, Y.Shi
compound		source
Molecule: Apoptotic Protease Activating Factor 1 Chain: A, B, C, D Fragment: Apaf-1, Residues 1-591 Synonym: Apaf-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-29b
symmetry	Space Group: P 1	R_factor 0.189 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.955 92.883 94.988 62.96 89.99 90.05
method	X-Ray Diffraction	resolution	2.21 Å
ligand	ADP	enzyme
note	1Z6T (Molecule of the Month:pdb177)
related structures	by homologous chain: 2YGS, 3YGS
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure of the apoptotic protease-activating factor 1 bound to ADP., Riedl SJ, Li W, Chao Y, Schwarzenbacher R, Shi Y, Nature 2005 Apr 14;434(7035):926-33. PMID:15829969

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (393 Kb) [Save to disk] Biological Unit Coordinates (1z6t.pdb1.gz) 100 Kb Biological Unit Coordinates (1z6t.pdb2.gz) 101 Kb Biological Unit Coordinates (1z6t.pdb3.gz) 101 Kb Biological Unit Coordinates (1z6t.pdb4.gz) 99 Kb LPC: Ligand-Protein Contacts for 1Z6T CSU: Contacts of Structural Units for 1Z6T Likely Quarternary Molecular Structure file(s) for 1Z6T Retrieve 1Z6T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z6T from S2C, [Save to disk]

View 1Z6T in 3D

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Visual 3D analysis of 1Z6T

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z6T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z6t_A] [1z6t_D] [1z6t_C] [1z6t_B] [1z6t] SWISS-PROT database: [O14727] Domain organization of [APAF_HUMAN] by SWISSPFAM

Other resources with information on 1Z6T

Community annotation for 1Z6T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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