1Z8Y Virus date Mar 31, 2005
title Mapping The E2 Glycoprotein Of Alphaviruses
authors S.Mukhopadhyay, W.Zhang, S.Gabler, P.R.Chipman, E.G.Strauss, J.H. T.S.Baker, R.J.Kuhn, M.G.Rossmann
compound source
Molecule: Spike Glycoprotein E1
Chain: A, C, E, G
Fragment: E1 Ectodomain Domains I+II, Residues 1-290
 Organism_scientific: Sindbis Virus
Organism_taxid: 11034
Strain: Te12
Cell: Baby Hamster Kidney

Molecule: Spike Glycoprotein E1
Chain: B, D, F, H
Fragment: E1 Ectodomain Domain III, Residues 295-383
Organism_scientific: Sindbis Virus
Organism_taxid: 11034
Strain: Te12
Cell: Baby Hamster Kidney

Molecule: Spike Glycoprotein E1
Chain: I, K, M, O
Fragment: E1 Transmembrane Region, Residues 409-439
Organism_scientific: Sindbis Virus
Organism_taxid: 11034
Strain: Te12
Cell: Baby Hamster Kidney

Molecule: Spike Glycoprotein E2
Chain: J, L, N, P
Fragment: E2 Transmembrane Region, Residues 363-398
Organism_scientific: Sindbis Virus
Organism_taxid: 11034
Strain: Te12
Cell: Baby Hamster Kidney

Molecule: Capsid Protein C
Chain: Q, R, S, T
Fragment: Capsid Protein, Residues 114-264
Synonym: Coat Protein C
Ec: 3.4.21.-
Organism_scientific: Sindbis Virus
Organism_taxid: 11034
Strain: Te12
Cell: Baby Hamster Kidney
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.00 Å
ligand
enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


J, N, P, L


S, T, Q, R


Primary referenceMapping the structure and function of the E1 and E2 glycoproteins in alphaviruses., Mukhopadhyay S, Zhang W, Gabler S, Chipman PR, Strauss EG, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG, Structure. 2006 Jan;14(1):63-73. PMID:16407066
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk]
  • Biological Unit Coordinates (1z8y.pdb1.gz) 21429 Kb
  • CSU: Contacts of Structural Units for 1Z8Y
  • Likely Quarternary Molecular Structure file(s) for 1Z8Y
  • Retrieve 1Z8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z8Y from S2C, [Save to disk]
    • View 1Z8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Z8Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z8Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z8y_I] [1z8y_Q] [1z8y_J] [1z8y_G] [1z8y_C] [1z8y] [1z8y_A] [1z8y_L] [1z8y_E] [1z8y_N] [1z8y_H] [1z8y_F] [1z8y_R] [1z8y_S] [1z8y_O] [1z8y_M] [1z8y_K] [1z8y_T] [1z8y_P] [1z8y_D] [1z8y_B]
  • SWISS-PROT database: [P03316]
  • Domain organization of [POLS_SINDV] by SWISSPFAM
    • Other resources with information on 1Z8Y
  • Community annotation for 1Z8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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