1ZAK Transferase date May 31, 1997
title Adenylate Kinase From Maize In Complex With The Inhibitor P1 Bis(Adenosine-5'-)Pentaphosphate (Ap5a)
authors K.Wild, G.E.Schulz
compound source
Molecule: Adenylate Kinase
Chain: A, B
Ec: 2.7.4.3
 Organism_scientific: Zea Mays
Organism_taxid: 4577
Organelle: Chloroplast
Cellular_location: Cytoplasm
symmetry Space Group: P 3
R_factor 0.218 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.300 83.300 69.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand AP5 enzyme Transferase E.C.2.7.4.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • adenylate kinase activity
  • cytidylate kinase activity


    • Primary referenceStructure, catalysis and supramolecular assembly of adenylate kinase from maize., Wild K, Grafmuller R, Wagner E, Schulz GE, Eur J Biochem 1997 Dec 1;250(2):326-31. PMID:9428681
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1zak.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1ZAK
  • CSU: Contacts of Structural Units for 1ZAK
  • Likely Quarternary Molecular Structure file(s) for 1ZAK
  • Structure Factors (57 Kb)
  • Retrieve 1ZAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZAK from S2C, [Save to disk]
  • Re-refined 1zak structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1ZAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZAK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZAK, from MSDmotif at EBI
  • Genome occurence of 1ZAK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1zaka2, region A:128-158 [Jmol] [rasmolscript] [script source]
        - Domain d1zaka1, region A:3-127,A:159-222 [Jmol] [rasmolscript] [script source]
        - Domain d1zakb2, region B:128-158 [Jmol] [rasmolscript] [script source]
        - Domain d1zakb1, region B:3-127,B:159-222 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zak_B] [1zak_A] [1zak]
  • SWISS-PROT database: [P43188]
  • Domain organization of [KADC_MAIZE] by SWISSPFAM
    • Other resources with information on 1ZAK
  • Community annotation for 1ZAK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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