1ZD0 Structural Genomics, Unknown Function date Apr 13, 2005
title Crystal Structure Of Pfu-542154 Conserved Hypothetical Prote
authors J.E.Habel, Z.J.Liu, P.S.Horanyi, Q.J.T.Florence, W.Tempel, W.Zhou D.Lee, J.Nguyen, S.H.Chang, P.Bereton, M.Izumi, F.E.Jenny Jr., F. Ii, C.Shah, F.J.Sugar, M.W.W.Adams, J.P.Rose, B.C.Wang, Southeast Collaboratory For Structural Genomics (Secsg)
compound source
Molecule: Hypothetical Protein Pf0523
Chain: A
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Gene: Pf0523
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24 Dbam
symmetry Space Group: P 31 2 1
R_factor 0.202 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.460 53.460 85.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand MG, MOH, UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (1zd0.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1ZD0
  • CSU: Contacts of Structural Units for 1ZD0
  • Likely Quarternary Molecular Structure file(s) for 1ZD0
  • Structure Factors (123 Kb)
  • Retrieve 1ZD0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZD0 from S2C, [Save to disk]
  • Re-refined 1zd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1ZD0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZD0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZD0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zd0_A] [1zd0]
  • SWISS-PROT database: [Q8U3E5]
  • Domain organization of [Q8U3E5_PYRFU] by SWISSPFAM
    • Other resources with information on 1ZD0
  • Community annotation for 1ZD0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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