1ZFF TTC Duplex B-DNA date
authors Hays, F.A., Teegarden, A.T., Jones, Z.J.R., Harms, M., Raup, D., Watson, J., Cavaliere, E., Ho, P.S.
compound source
symmetry
R_factor
R_Free 0.444
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 0.94
Primary referenceHow sequence defines structure: a crystallographic map of DNA structure and conformation., Hays FA, Teegarden A, Jones ZJ, Harms M, Raup D, Watson J, Cavaliere E, Ho PS, Proc Natl Acad Sci U S A. 2005 May 17;102(20):7157-62. Epub 2005 May 3. PMID:15870206
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (1zff.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 1ZFF
  • Likely Quarternary Molecular Structure file(s) for 1ZFF
  • Structure Factors (59 Kb)
  • Retrieve 1ZFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZFF from S2C, [Save to disk]
  • Re-refined 1zff structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZFF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZFF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zff_A] [1zff]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1ZFF
  • Community annotation for 1ZFF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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