1ZJM	Dna Lyase Transferase	date	Apr 29, 2005
title	Human Dna Polymerase Beta Complexed With Dna Containing An A Mismatched Primer Terminus
authors	V.K.Batra, W.A.Beard, D.D.Shock, L.C.Pedersen, S.H.Wilson
compound		source
Molecule: D(Cpcpgpapcpcpapcpgpcpaptpcpapgpc Chain: T Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Gpcptpgpaptpgpcpgpa)-3' Chain: P Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Pgptpcpgpg)-3' Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Dna Polymerase Beta Chain: A Ec: 2.7.7.7, 4.2.99.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.228 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.100 79.100 54.900 90.00 105.90 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Nucleotide-induced DNA polymerase active site motions accommodating a mutagenic DNA intermediate., Batra VK, Beard WA, Shock DD, Pedersen LC, Wilson SH, Structure (Camb) 2005 Aug;13(8):1225-33. PMID:16084394

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (1zjm.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 1ZJM CSU: Contacts of Structural Units for 1ZJM Likely Quarternary Molecular Structure file(s) for 1ZJM Structure Factors (357 Kb) Retrieve 1ZJM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZJM from S2C, [Save to disk] Re-refined 1zjm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZJM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZJM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZJM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zjm_P] [1zjm_D] [1zjm_A] [1zjm_T] [1zjm] SWISS-PROT database: [P06746] Domain organization of [DPOLB_HUMAN] by SWISSPFAM Domains found in 1ZJM: [HhH1] [POLXc ] by SMART

Other resources with information on 1ZJM

Community annotation for 1ZJM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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