1ZMD	Oxidoreductase	date	May 10, 2005
title	Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Co Nadh
authors	C.A.Brautigam, J.L.Chuang, D.R.Tomchick, M.Machius, D.T.Chuang
compound		source
Molecule: Dihydrolipoyl Dehydrogenase Chain: A, B, C, D, E, F, G, H Synonym: Dihydrolipoamide Dehydrogenase, Glycine Cleavage S Protein; Ec: 1.8.1.4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dld, Gcsl, Lad, Phe3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl1-Blue Expression_system_vector_type: Ptrchisthe3 Expression_system_plasmid: Plasmid
symmetry	Space Group: P 21 21 2	R_factor 0.221 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 175.871 210.914 127.096 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.08 Å
ligand	FAD, NAI, SO4	enzyme	Oxidoreductase E.C.1.8.1.4 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G pyruvate dehydrogenase (NAD+...
Primary reference	Crystal Structure of Human Dihydrolipoamide Dehydrogenase: NAD(+)/NADH Binding and the Structural Basis of Disease-causing Mutations., Brautigam CA, Chuang JL, Tomchick DR, Machius M, Chuang DT, J Mol Biol 2005 Jul 15;350(3):543-52. PMID:15946682

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (626 Kb) [Save to disk] Biological Unit Coordinates (1zmd.pdb1.gz) 160 Kb Biological Unit Coordinates (1zmd.pdb2.gz) 160 Kb Biological Unit Coordinates (1zmd.pdb3.gz) 163 Kb Biological Unit Coordinates (1zmd.pdb4.gz) 164 Kb LPC: Ligand-Protein Contacts for 1ZMD CSU: Contacts of Structural Units for 1ZMD Likely Quarternary Molecular Structure file(s) for 1ZMD Structure Factors (2441 Kb) Retrieve 1ZMD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZMD from S2C, [Save to disk] Re-refined 1zmd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 1ZMD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZMD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zmd_B] [1zmd_A] [1zmd_E] [1zmd_D] [1zmd_C] [1zmd_H] [1zmd_F] [1zmd] [1zmd_G] SWISS-PROT database: [P09622] Domain organization of [DLDH_HUMAN] by SWISSPFAM

Other resources with information on 1ZMD

Community annotation for 1ZMD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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