OCA Atlas for 1ZMD

1ZMD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

FAD, NAI, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
G, A, C, E, B, D, H, F	pyruvate dehydrogenase (NAD+...

Primary reference

Crystal Structure of Human Dihydrolipoamide Dehydrogenase: NAD(+)/NADH Binding and the Structural Basis of Disease-causing Mutations., Brautigam CA, Chuang JL, Tomchick DR, Machius M, Chuang DT, J Mol Biol 2005 Jul 15;350(3):543-52. PMID:15946682

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (626 Kb) [Save to disk]

Biological Unit Coordinates (1zmd.pdb1.gz) 160 Kb

Biological Unit Coordinates (1zmd.pdb2.gz) 160 Kb

Biological Unit Coordinates (1zmd.pdb3.gz) 163 Kb

Biological Unit Coordinates (1zmd.pdb4.gz) 164 Kb

LPC: Ligand-Protein Contacts for 1ZMD

CSU: Contacts of Structural Units for 1ZMD

Likely Quarternary Molecular Structure file(s) for 1ZMD

Structure Factors (2441 Kb)

Retrieve 1ZMD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1ZMD from S2C, [Save to disk]

Re-refined 1zmd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZMD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zmd_A] [1zmd] [1zmd_B] [1zmd_C] [1zmd_D] [1zmd_E] [1zmd_F] [1zmd_G] [1zmd_H]

SWISS-PROT database: [P09622]

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