1ZR3 Gene Regulation date May 19, 2005
title Crystal Structure Of The Macro-Domain Of Human Core Histone Macroh2a1.1 (Form B)
authors G.Kustatscher, M.Hothorn, C.Pugieux, K.Scheffzek, A.G.Ladurner
compound source
Molecule: Histone Macroh2a1.1
Chain: A, B, C, D
Fragment: Non-Histone Macro-Domain (Residues: 162-369)
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.900 89.200 92.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand MES enzyme
note 1ZR3 is a representative structure
Primary referenceGetting a grip on O-acetyl-ADP-ribose., Hoff KG, Wolberger C, Nat Struct Mol Biol. 2005 Jul;12(7):560-1. PMID:15999106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (1zr3.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (1zr3.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (1zr3.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (1zr3.pdb4.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1ZR3
  • CSU: Contacts of Structural Units for 1ZR3
  • Likely Quarternary Molecular Structure file(s) for 1ZR3
  • Structure Factors (563 Kb)
  • Retrieve 1ZR3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZR3 from S2C, [Save to disk]
  • Re-refined 1zr3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1ZR3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZR3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZR3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zr3_C] [1zr3] [1zr3_A] [1zr3_B] [1zr3_D]
  • SWISS-PROT database: [O75367]
  • Domain organization of [H2AY_HUMAN] by SWISSPFAM
  • Domain found in 1ZR3: [A1pp ] by SMART
    • Other resources with information on 1ZR3
  • Community annotation for 1ZR3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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