218D Dna date Jul 18, 1995
title The Structure Of A New Crystal Form Of A Dna Dodecamer Conta T.(O6me)G Base Pairs
authors J.Vojtechovsky, M.D.Eaton, B.Gaffney, R.Jones, H.M.Berman
compound source
Molecule: Dna (5'-D(Cpgptpgpapaptptpcp(6og)Pcpg
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.167 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
22.120 38.810 64.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand 6OG enzyme
Primary referenceStructure of a new crystal form of a DNA dodecamer containing T.(O6Me)G base pairs., Vojtechovsky J, Eaton MD, Gaffney B, Jones R, Berman HM, Biochemistry 1995 Dec 26;34(51):16632-40. PMID:8527436
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (218d.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 218D
  • CSU: Contacts of Structural Units for 218D
  • Likely Quarternary Molecular Structure file(s) for 218D
  • Structure Factors (43 Kb)
  • Retrieve 218D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 218D from S2C, [Save to disk]
  • Re-refined 218d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 218D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 218D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 218D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [218d_B] [218d_A] [218d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 218D
  • Community annotation for 218D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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