241D Dna date Dec 07, 1995
title Extension Of The Four-Stranded Intercalated Cytosine Motif B Adenine.Adenine Base Pairing In The Crystal Structure Of D(
authors I.Berger, C.Kang, A.Fredian, R.Ratliff, R.Moyzis, A.Rich
compound source
Molecule: Dna (5'-D(Cpcpcpapapt)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 62
R_factor 0.194 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.180 32.180 52.490 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
Primary referenceExtension of the four-stranded intercalated cytosine motif by adenine.adenine base pairing in the crystal structure of d(CCCAAT)., Berger I, Kang C, Fredian A, Ratliff R, Moyzis R, Rich A, Nat Struct Biol 1995 May;2(5):416-25. PMID:7664099
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (241d.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 241D
  • Likely Quarternary Molecular Structure file(s) for 241D
  • Retrieve 241D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 241D from S2C, [Save to disk]
    • View 241D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 241D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 241D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [241d_B] [241d_A] [241d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 241D
  • Community annotation for 241D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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