242D Dna date Jun 20, 1996
title Mad Phasing Strategies Explored With A Brominated Oligonucle Crystal At 1.65 A Resolution.
authors M.R.Peterson, S.J.Harrop, S.M.Mcsweeney, G.A.Leonard, A.W.Thomps W.N.Hunter, J.R.Helliwell
compound source
Molecule: Dna (5'-D(Cpgpcpgp(Cbr)Pg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.970 30.980 44.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CBR enzyme
Primary referenceMAD Phasing Strategies Explored with a Brominated Oligonucleotide Crystal at 1.65A Resolution., Peterson MR, Harrop SJ, McSweeney SM, Leonard GA, Thompson AW, Hunter WN, Helliwell JR, J Synchrotron Radiat. 1996 Jan 1;3(Pt 1):24-34. PMID:16702655
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (242d.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 242D
  • CSU: Contacts of Structural Units for 242D
  • Likely Quarternary Molecular Structure file(s) for 242D
  • Structure Factors (26 Kb)
  • Retrieve 242D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 242D from S2C, [Save to disk]
  • Re-refined 242d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 242D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 242D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 242D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [242d_A] [242d] [242d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 242D
  • Community annotation for 242D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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