287D Dna date Sep 20, 1996
title X-Ray And Solution Studies Of Dna Oligomers And Implications For The Structural Basis Of A-Tract-Dependent Curvature
authors M.Eisenstein, M.Shatzky-Schwartz, Z.Shakked
compound source
Molecule: Dna (5'-D(Cpgpcpgpaptpaptpcpgpcpg)- 3');
Chain: A, B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.279 39.355 66.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Primary referenceX-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature., Shatzky-Schwartz M, Arbuckle ND, Eisenstein M, Rabinovich D, Bareket-Samish A, Haran TE, Luisi BF, Shakked Z, J Mol Biol 1997 Apr 4;267(3):595-623. PMID:9126841
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (287d.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 287D
  • Likely Quarternary Molecular Structure file(s) for 287D
  • Structure Factors (22 Kb)
  • Retrieve 287D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 287D from S2C, [Save to disk]
  • Re-refined 287d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 287D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 287D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 287D, from MSDmotif at EBI
  • Fold representative 287d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [287d_A] [287d_B] [287d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 287D
  • Community annotation for 287D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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