2A8V Protein Rna date Nov 08, 1998
title Rho Transcription Termination Factorrna Complex
authors C.E.Bogden, D.Fass, N.Bergman, M.D.Nichols, J.M.Berger
compound source
Molecule: 5'-R(Pcpcpc)-3'
Chain: D
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Dh5a
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24b

Molecule: 5'-R(Pcpcpcpcpcpc)-3'
Chain: E
Engineered: Yes

Synthetic: Yes

Molecule: Rna Binding Domain Of Rho Transcription Terminati
Chain: A, B, C
Fragment: N-Terminal Rna Binding Domain
Synonym: Rho
Engineered: Yes

symmetry Space Group: C 1 2 1
R_factor 0.246 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.783 31.308 105.751 90.00 122.98 90.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1A8V, 1PV4
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe structural basis for terminator recognition by the Rho transcription termination factor., Bogden CE, Fass D, Bergman N, Nichols MD, Berger JM, Mol Cell 1999 Apr;3(4):487-93. PMID:10230401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2a8v.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (2a8v.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (2a8v.pdb3.gz) 20 Kb
  • CSU: Contacts of Structural Units for 2A8V
  • Likely Quarternary Molecular Structure file(s) for 2A8V
  • Retrieve 2A8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A8V from S2C, [Save to disk]
  • View 2A8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A8V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A8V, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2a8va1, region A:1-47 [Jmol] [rasmolscript] [script source]
        - Domain d2a8va2, region A:48-118 [Jmol] [rasmolscript] [script source]
        - Domain d2a8vb1, region B:1-47 [Jmol] [rasmolscript] [script source]
        - Domain d2a8vb2, region B:48-118 [Jmol] [rasmolscript] [script source]
        - Domain d2a8vc1, region C:1-47 [Jmol] [rasmolscript] [script source]
        - Domain d2a8vc2, region C:48-118 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a8v_D] [2a8v_C] [2a8v_E] [2a8v_A] [2a8v] [2a8v_B]
  • SWISS-PROT database: [P0AG30]
  • Domain organization of [RHO_ECOLI] by SWISSPFAM
  • Domains found in 2A8V: [CSP] [Rho_N ] by SMART
  • Other resources with information on 2A8V
  • Community annotation for 2A8V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2A8V from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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