2AGG	Hydrolase Hydrolase Inhibitor	date	Jul 26, 2005
title	Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
authors	E.S.Radisky, J.M.Lee, C.J.Lu, D.E.Koshland Jr.
compound		source
Molecule: Cationic Trypsin Chain: X Synonym: Beta-Trypsin Ec: 3.4.21.4		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Organ: Pancreas
Molecule: Succinyl-Ala-Ala-Pro-Lys Chain: A Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.124 R_Free 0.158
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.388 63.588 68.849 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.28 Å
ligand	CA, SIN, SO4	enzyme	Hydrolase E.C.3.4.21.4 BRENDA
Gene Ontology	Chain Function Process Component X
Primary reference	Insights into the serine protease mechanism from atomic resolution structures of trypsin reaction intermediates., Radisky ES, Lee JM, Lu CJ, Koshland DE Jr, Proc Natl Acad Sci U S A. 2006 May 2;103(18):6835-40. Epub 2006 Apr 24. PMID:16636277

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (2agg.pdb1.gz) 82 Kb LPC: Ligand-Protein Contacts for 2AGG CSU: Contacts of Structural Units for 2AGG Likely Quarternary Molecular Structure file(s) for 2AGG Structure Factors (478 Kb) Retrieve 2AGG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2AGG from S2C, [Save to disk] Re-refined 2agg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2AGG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2AGG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2AGG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2agg_X] [2agg_A] [2agg] SWISS-PROT database: [P00760] Domain organization of [TRY1_BOVIN] by SWISSPFAM Domain found in 2AGG: [Tryp_SPc ] by SMART

Other resources with information on 2AGG

Community annotation for 2AGG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---