2AGJ	Immune System	date	Jul 27, 2005
title	Crystal Structure Of A Glycosylated Fab From An Igm Cryoglob Properties Of A Natural Proteolytic Antibody
authors	P.A.Ramsland, S.S.Terzyan, G.Cloud, C.R.Bourne, W.Farrugia, G.Tri H.M.Geysen, C.R.Moomaw, C.A.Slaughter, A.B.Edmundson
compound		source
Molecule: Yvo Fab, Light Chain Chain: L		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Yvo Fab, Heavy Chain Chain: H		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 2 2 2	R_factor 0.219 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.433 103.653 138.715 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	NAG, PCA	enzyme
Gene Ontology	Chain Function Process Component L
Primary reference	Crystal structure of a glycosylated Fab from an IgM cryoglobulin with properties of a natural proteolytic antibody., Ramsland PA, Terzyan SS, Cloud G, Bourne CR, Farrugia W, Tribbick G, Geysen HM, Moomaw CR, Slaughter CA, Edmundson AB, Biochem J. 2006 May 1;395(3):473-81. PMID:16422668

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (2agj.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 2AGJ CSU: Contacts of Structural Units for 2AGJ Likely Quarternary Molecular Structure file(s) for 2AGJ Structure Factors (293 Kb) Retrieve 2AGJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2AGJ from S2C, [Save to disk] Re-refined 2agj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2AGJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2AGJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2AGJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2agj] [2agj_L] [2agj_H] SWISS-PROT database: [P01871] [Q6PJF2] Domain organization of [IGHM_HUMAN] [Q6PJF2_HUMAN] by SWISSPFAM Domains found in 2AGJ: [IG_like] [IGv ] by SMART

Other resources with information on 2AGJ

Community annotation for 2AGJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---