2AGP Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis date
authors Ling, H., Yang, W.
compound source
symmetry
R_factor
R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand CA, DGT, DOC, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis., Vaisman A, Ling H, Woodgate R, Yang W, EMBO J 2005 Sep 7;24(17):2957-67. Epub 2005 Aug 18. PMID:16107880
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (2agp.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (2agp.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 2AGP
  • CSU: Contacts of Structural Units for 2AGP
  • Likely Quarternary Molecular Structure file(s) for 2AGP
  • Structure Factors (166 Kb)
  • Retrieve 2AGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AGP from S2C, [Save to disk]
  • Re-refined 2agp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AGP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AGP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AGP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2agp_A] [2agp_E] [2agp_F] [2agp] [2agp_B] [2agp_C] [2agp_D]
  • SWISS-PROT database: [Q97W02]
  • Domain organization of [DPO42_SULSO] by SWISSPFAM
  • Other resources with information on 2AGP
  • Community annotation for 2AGP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science